library construction ENA Upload Tool

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SEEK ID: https://datahub-test.elixir-belgium.org/templates/27

Submitter: System

Projects: Default Project, testing template created by user in SP

Version: 1.0.0

Group: ena modified for upload tool

1 Sample type is referencing this Experiment Sample Template

ISA Level: assay - material

Organism: any

Parent Template: None

Child Templates:

Attributes

NameTypeDescriptionPID helpISA Tag helpUnit
Input*Registered Sample List - /templates/27Existing Samples in DataHub that represent input for this protocol.---
library construction*Stringtype of assay or experimental step performed.-other_material-
library_construction_protocolStringFree form text describing the protocol by which the sequencing library was constructed.-parameter_value-
title*StringShort text that can be used to call out experiment records in searches or in displays.-other_material_characteristic-
design_descriptionStringThe design of the library including details of how it was constructed. -parameter_value-
library_name*StringName given to the generated library-other_material_characteristic-
library_source*Controlled Vocabulary - library_sourceThe LIBRARY_SOURCE specifies the type of source material that is being sequenced. (SRA 1.2 documentation)-parameter_value-
library_strategy*Controlled Vocabulary - library_strategySequencing technique intended for this library (SRA 1.2 documentation)-parameter_value-
library_selection*Controlled Vocabulary - library_selectionWhether any method was used to select for or against, enrich, or screen the material being sequenced. (SRA 1.2 documentation)-parameter_value-
library_layout*Controlled Vocabulary - library_layoutspecifies whether to expect single, paired, or other configuration of reads. In the case of paired reads, information about the relative distance and orientation is specified.-parameter_value-
insert_sizeStringInsert size for paired reads.-parameter_value-
platform*Controlled Vocabulary - platforma parameter to report the sequencing instrument model and make-parameter_value-
instrument_model*Controlled Vocabulary - instrument_modela parameter to report the sequencing instrument model and make-parameter_value-
accessionStringENA experiment accession code. Provided by ENA after submission.-other_material_characteristic-
submission_dateStringDate in which run was submitted to ENA.-other_material_characteristic-
statusControlled Vocabulary - statusStatus of submission to ENA.-other_material_characteristic-
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