source all organisms

No description specified

Attributes

Name	Type	Description	PID	ISA Tag	Unit
Source Name*	String	Sources are considered as the starting biological material used in a study.	-	source	-
Title*	String	Short text that can be used to call out sample records in search results or in displays.	-	source_characteristic	-
Description*	String	Free-form text describing the sample, its origin, and its method of isolation.	-	source_characteristic	-
tax_id*	String	NCBI Taxonomy Identifier number ID. This is appropriate for individual organisms and some environmental samples.	-	source_characteristic	-
organism	String	Provide a taxonomic information associated to the Source Biological material (for example, Species, genus, strain,....). Ideally, provide NCBI TaxID or NEWT identifier	-	source_characteristic	-
cell_type	String	cell type from which the sample was obtained	-	source_characteristic	-
dev_stage	String	if the sample was obtained from an organism in a specific developmental stage, it is specified with this qualifier	-	source_characteristic	-
germline	String	the sample described presented in the entry has not undergone somatic genomic rearrangement as part of an adaptive immune response; it is the unrearranged molecule that was inherited from the parental germline	-	source_characteristic	-
tissue_lib	String	tissue library from which sample was obtained	-	source_characteristic	-
tissue_type	String	tissue type from which the sample was obtained	-	source_characteristic	-
collection_date	String	The date of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid ISO8601 compliant times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008.	-	source_characteristic	-
isolation_source	String	describes the physical, environmental and/or local geographical source of the biological sample from which the sample was derived	-	source_characteristic	-
lat_lon	String	geographical coordinates of the location where the specimen was collected	-	source_characteristic	-
collected_by	String	name of persons or institute who collected the specimen	-	source_characteristic	-
geographic location (country and/or sea)	Controlled Vocabulary - geographic location (country and/or sea)	The geographical origin of the sample as defined by the country or sea. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html).	-	source_characteristic	-
geographic location (region and locality)	String	The geographical origin of the sample as defined by the specific region name followed by the locality name.	-	source_characteristic	-
identified_by	String	name of the expert who identified the specimen taxonomically	-	source_characteristic	-
environmental_sample	Controlled Vocabulary - environmental_sample	identifies sequences derived by direct molecular isolation from a bulk environmental DNA sample (by PCR with or without subsequent cloning of the product, DGGE, or other anonymous methods) with no reliable identification of the source organism	-	source_characteristic	-
mating_type	String	mating type of the organism from which the sequence was obtained; mating type is used for prokaryotes, and for eukaryotes that undergo meiosis without sexually dimorphic gametes	-	source_characteristic	-
sex	String	sex of the organism from which the sample was obtained	-	source_characteristic	-
lab_host	String	scientific name of the laboratory host used to propagate the source organism from which the sample was obtained	-	source_characteristic	-
host scientific name	String	Scientific name of the natural (as opposed to laboratory) host to the organism from which sample was obtained.	-	source_characteristic	-
bio_material	String	identifier for the biological material from which the sample was obtained, with optional institution code and collection code for the place where it is currently stored.	-	source_characteristic	-
culture_collection	String	institution code and identifier for the culture from which the sample was obtained, with optional collection code.	-	source_characteristic	-
specimen_voucher	String	identifier for the specimen from which the sample was obtained	-	source_characteristic	-
cultivar	String	cultivar (cultivated variety) of plant from which sample was obtained	-	source_characteristic	-
ecotype	String	a population within a given species displaying genetically based, phenotypic traits that reflect adaptation to a local habitat.	-	source_characteristic	-
isolate	String	individual isolate from which the sample was obtained	-	source_characteristic	-
sub_species	String	name of sub-species of organism from which sample was obtained	-	source_characteristic	-
variety	String	variety (= varietas, a formal Linnaean rank) of organism from which sample was derived.	-	source_characteristic	-
sub_strain	String	name or identifier of a genetically or otherwise modified strain from which sample was obtained, derived from a parental strain (which should be annotated in the strain field; sub_strain from which sample was obtained	-	source_characteristic	-
cell_line	String	cell line from which the sample was obtained	-	source_characteristic	-
serotype	String	serological variety of a species characterized by its antigenic properties	-	source_characteristic	-
serovar	String	serological variety of a species (usually a prokaryote) characterized by its antigenic properties	-	source_characteristic	-
strain	String	Name of the strain from which the sample was obtained.	-	source_characteristic	-
submission date	String	Date in which sample was submitted to ENA.	-	source_characteristic	-
status	Controlled Vocabulary - status	Status of submission to ENA.	-	source_characteristic	-
accession	String	ENA sample accession code. Provided by ENA after submission.	-	source_characteristic	-

Name

Type

Description

PID

ISA Tag

Unit

Source Name*

String

Sources are considered as the starting biological material used in a study.

source

Title*

String

Short text that can be used to call out sample records in search results or in displays.

source_characteristic

Description*

String

Free-form text describing the sample, its origin, and its method of isolation.

source_characteristic

tax_id*

String

NCBI Taxonomy Identifier number ID. This is appropriate for individual organisms and some environmental samples.

source_characteristic

organism

String

Provide a taxonomic information associated to the Source Biological material (for example, Species, genus, strain,....). Ideally, provide NCBI TaxID or NEWT identifier

source_characteristic

cell_type

String

cell type from which the sample was obtained

source_characteristic

dev_stage

String

if the sample was obtained from an organism in a specific developmental stage, it is specified with this qualifier

source_characteristic

germline

String

the sample described presented in the entry has not undergone somatic genomic rearrangement as part of an adaptive immune response; it is the unrearranged molecule that was inherited from the parental germline

source_characteristic

tissue_lib

String

tissue library from which sample was obtained

source_characteristic

tissue_type

String

tissue type from which the sample was obtained

source_characteristic

collection_date

String

The date of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid ISO8601 compliant times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008.

source_characteristic

isolation_source

String

describes the physical, environmental and/or local geographical source of the biological sample from which the sample was derived

source_characteristic

lat_lon

String

geographical coordinates of the location where the specimen was collected

source_characteristic

collected_by

String

name of persons or institute who collected the specimen

source_characteristic

geographic location (country and/or sea)

Controlled Vocabulary - geographic location (country and/or sea)

The geographical origin of the sample as defined by the country or sea. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html).

source_characteristic

geographic location (region and locality)

String

The geographical origin of the sample as defined by the specific region name followed by the locality name.

source_characteristic

identified_by

String

name of the expert who identified the specimen taxonomically

source_characteristic

environmental_sample

Controlled Vocabulary - environmental_sample

identifies sequences derived by direct molecular isolation from a bulk environmental DNA sample (by PCR with or without subsequent cloning of the product, DGGE, or other anonymous methods) with no reliable identification of the source organism

source_characteristic

mating_type

String

mating type of the organism from which the sequence was obtained; mating type is used for prokaryotes, and for eukaryotes that undergo meiosis without sexually dimorphic gametes

source_characteristic

sex

String

sex of the organism from which the sample was obtained

source_characteristic

lab_host

String

scientific name of the laboratory host used to propagate the source organism from which the sample was obtained

source_characteristic

host scientific name

String

Scientific name of the natural (as opposed to laboratory) host to the organism from which sample was obtained.

source_characteristic

bio_material

String

identifier for the biological material from which the sample was obtained, with optional institution code and collection code for the place where it is currently stored.

source_characteristic

culture_collection

String

institution code and identifier for the culture from which the sample was obtained, with optional collection code.

source_characteristic

specimen_voucher

String

identifier for the specimen from which the sample was obtained

source_characteristic

cultivar

String

cultivar (cultivated variety) of plant from which sample was obtained

source_characteristic

ecotype

String

a population within a given species displaying genetically based, phenotypic traits that reflect adaptation to a local habitat.

source_characteristic

isolate

String

individual isolate from which the sample was obtained

source_characteristic

sub_species

String

name of sub-species of organism from which sample was obtained

source_characteristic

variety

String

variety (= varietas, a formal Linnaean rank) of organism from which sample was derived.

source_characteristic

sub_strain

String

name or identifier of a genetically or otherwise modified strain from which sample was obtained, derived from a parental strain (which should be annotated in the strain field; sub_strain from which sample was obtained

source_characteristic

cell_line

String

cell line from which the sample was obtained

source_characteristic

serotype

String

serological variety of a species characterized by its antigenic properties

source_characteristic

serovar

String

serological variety of a species (usually a prokaryote) characterized by its antigenic properties

source_characteristic

strain

String

Name of the strain from which the sample was obtained.

source_characteristic

submission date

String

Date in which sample was submitted to ENA.

source_characteristic

status

Controlled Vocabulary - status

Status of submission to ENA.

source_characteristic

accession

String

ENA sample accession code. Provided by ENA after submission.

source_characteristic

source all organisms

Attributes

Related items