library construction

No description specified

Attributes

Name	Type	Description	PID	ISA Tag	Unit
Input*	Registered Sample List - /templates/13	Existing Samples in DataHub that represent input for this protocol.	-	-	-
library construction*	String	type of assay or experimental step performed.	-	protocol	-
library_construction_protocol	String	Free form text describing the protocol by which the sequencing library was constructed.	-	parameter_value	-
Title*	String	Short text that can be used to call out experiment records in searches or in displays.	-	other_material_characteristic	-
design_description*	String	The design of the library including details of how it was constructed.	-	parameter_value	-
library source*	Controlled Vocabulary - library source	The LIBRARY_SOURCE specifies the type of source material that is being sequenced. (SRA 1.2 documentation)	-	parameter_value	-
library strategy*	Controlled Vocabulary - library strategy	Sequencing technique intended for this library (SRA 1.2 documentation)	-	parameter_value	-
library selection*	Controlled Vocabulary - library selection	Whether any method was used to select for or against, enrich, or screen the material being sequenced. (SRA 1.2 documentation)	-	parameter_value	-
library layout	Controlled Vocabulary - library layout	specifies whether to expect single, paired, or other configuration of reads. In the case of paired reads, information about the relative distance and orientation is specified.	-	parameter_value	-
insert size	String	Insert size for paired reads.	-	parameter_value	-
library name*	String	Name given to the generated library	-	other_material	-
submission date	String	Date in which experiment was submitted to ENA.	-	other_material_characteristic	-
status	Controlled Vocabulary - status	Status of submission to ENA.	-	other_material_characteristic	-
accession	String	ENA experiment accession code. Provided by ENA after submission.	-	other_material_characteristic	-

Name

Type

Description

PID

ISA Tag

Unit

Input*

Registered Sample List - /templates/13

Existing Samples in DataHub that represent input for this protocol.

library construction*

String

type of assay or experimental step performed.

protocol

library_construction_protocol

String

Free form text describing the protocol by which the sequencing library was constructed.

parameter_value

Title*

String

Short text that can be used to call out experiment records in searches or in displays.

other_material_characteristic

design_description*

String

The design of the library including details of how it was constructed.

parameter_value

library source*

Controlled Vocabulary - library source

The LIBRARY_SOURCE specifies the type of source material that is being sequenced. (SRA 1.2 documentation)

parameter_value

library strategy*

Controlled Vocabulary - library strategy

Sequencing technique intended for this library (SRA 1.2 documentation)

parameter_value

library selection*

Controlled Vocabulary - library selection

Whether any method was used to select for or against, enrich, or screen the material being sequenced. (SRA 1.2 documentation)

parameter_value

library layout

Controlled Vocabulary - library layout

specifies whether to expect single, paired, or other configuration of reads. In the case of paired reads, information about the relative distance and orientation is specified.

parameter_value

insert size

String

Insert size for paired reads.

parameter_value

library name*

String

Name given to the generated library

other_material

submission date

String

Date in which experiment was submitted to ENA.

other_material_characteristic

status

Controlled Vocabulary - status

Status of submission to ENA.

other_material_characteristic

accession

String

ENA experiment accession code. Provided by ENA after submission.

other_material_characteristic

library construction

Attributes

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