Impact of host–microbiota on chicken production
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Hologenomic approach to understand the impact of host–microbiota interactions on chicken production by analysing multiomic data, phenotypic characteristics, and associated metadata in response to novel feeds.
SEEK ID: https://datahub-test.elixir-belgium.org/studies/98
Projects: HoloFood in DataHub
Study position:
Is ISA-JSON compliant: true
- source ENA Upload Tool 1.0.0 (id: 25)
- sample_collection 1.2.0 (id: 11)
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Creators and SubmitterViews: 222
Created: 21st Apr 2026 at 14:24
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Institutions: Default Institution, Vlaams Instituut voor Biotechnologie, uppsala University, ILVO, VIB
This is an example of how multi-omics study can be organised in DataHub. The HoloFood project is used as an example here.
Projects: HoloFood in DataHub
Web page: Not specified
Example
Programme: Example with HoloFood project
Public web page: Not specified
Multi-modal investigation in chickens
Library for host transcriptomics
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi-omics in chickens
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi-omics in chickens
HoloFood Chicken Host Transcriptome
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi-omics in chickens
Transcriptome sequencing
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi-omics in chickens
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi-omics in chickens
Library construction for HoloFood shotgun chicken transcriptomics
Creator: Flora D'Anna
Submitter: Flora D'Anna
HoloFood chromatography
Creator: Flora D'Anna
Submitter: Flora D'Anna
HoloFood metabolites extraction
Creator: Flora D'Anna
Submitter: Flora D'Anna
Source Sample Type linked to Study 'Impact of host–microbiota on chicken production'.
Source Name (String) *, geographic location (country and/or sea) (Controlled Vocabulary - geographic location (country and/or sea)) *, taxon_id (Integer) *, organism (Controlled Vocabulary - organism) *, Animal code (String) *, Trial code (String) , Pen code (String) , Treatment code (String) , Breed (String) , Trial timepoint (Real number) ( d ) , Sampling time (Real number) ( d ) , C-Reactive protein (Real number) , Chicken body weight (Real number) ( g ) , Feather cortisol (Real number) , Haptoglobin (Real number) , Lipopolysaccharide (Real number) , Project (String) , Animal BioSamples accession (String)
Not specified
Sample Collection Sample Type linked to Study 'Impact of host–microbiota on chicken production'.
Input (Source Name) (Registered Sample List) *, Sample Name (String) *, material type (Controlled Vocabulary - material type (free text allowed)) *, sample collection (String) *, Sample code (String) *, collection date (Date) *, Trial timepoint (Real number) ( d ) , Sampling site (String) , Body site (String) , Organism part (Controlled Vocabulary - organism part) , Sample BioSamples accession (String)
Not specified
Warning: A Protocol is missing. Associate a Protocol before exporting ISA.
