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In this Study we are re-sequencing a mutant line from our group to identify potential off target mutations.
SEEK ID: https://datahub-test.elixir-belgium.org/studies/3
Investigation - hi-per characterization
Projects: Mutant re-sequencing
Study position:
Is ISA-JSON compliant: true
- source plant 1.1.1 (id: 20)
- sample collection plant 1.0.0 (id: 16)
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Created: 19th Jul 2022 at 09:49

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- People (1)
- Programmes (1)
- Projects (1)
- Investigations (1)
- Assays (3+1)
- SOPs (3)
- Sample types (2)
- Samples (8)
Projects: Environmental stimuli on yeast, Mutant re-sequencing
Institutions: Default Institution
Projects: Environmental stimuli on yeast, Mutant re-sequencing
Web page: Not specified
Programme: Claire's research group
Public web page: Not specified
Organisms: Not specified
Characterizing the hi-per mutant line
Submitter: claire s
Studies: Study - Mutant re-sequencing
Assays: Assay - DNA extraction, Assay - Library preparation, Assay - Sequencing
Snapshots: No snapshots
This assay performs the DNA extraction
Submitter: David s
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation - hi-per characterization
Study: Study - Mutant re-sequencing
The assay design is based on ENA's requirements
Submitter: David s
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation - hi-per characterization
Study: Study - Mutant re-sequencing
This assay follows the standard design for whole genome sequencing at the Institute. Samples were sent to the sequencing facility.
Submitter: David s
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation - hi-per characterization
Study: Study - Mutant re-sequencing
The protocol that describes the DNA sequencing procedures
Investigations: Investigation - hi-per characterization
Studies: Study - Mutant re-sequencing
Assays: Assay - Sequencing
A protocol describing the library preparation step
Investigations: Investigation - hi-per characterization and 1 hidden item
Studies: Study - Mutant re-sequencing and 1 hidden item
Assays: Assay - Library preparation and 1 hidden item
A protocol describing the DNA extraction step
Investigations: Investigation - hi-per characterization and 2 hidden items
Studies: Study - Mutant re-sequencing and 2 hidden items
Assays: Assay - DNA extraction and 2 hidden items
most optional attributes removed
Source Name (String) *, Title (String) *, Description (String) *, tax_id (String) *, organism (String) , ploidy (Controlled Vocabulary - ploidy (free text allowed)) *, number of replicons (Integer) *, estimated size (Integer) *, collection date (String) *, geographic location (country and/or sea) (Controlled Vocabulary - geographic location (country and/or sea) (free text allowed)) *, geographic location (latitude) (String) *, geographic location (longitude) (String) *, isolation and growth condition (String) *, plant structure (Controlled Vocabulary - plant structure (free text allowed)) *, plant developmental stage (Controlled Vocabulary - plant developmental stage (free text allowed)) *, plant growth medium (String) *, submission date (String) , status (Controlled Vocabulary - status (free text allowed)) , accession (String)
Not specified
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