seq st 2
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Attributes
| Name | Type | Description | PID  | Unit |
|---|---|---|---|---|
| Input (library name)* | Registered Sample List | Existing Samples in DataHub that represent input for this protocol. | - | - |
| nucleic acid sequencing* | String | type of assay or experimental step performed. | - | - |
| sequencing instrument* | Controlled Vocabulary - sequencing instrument (free text allowed) | a parameter to report the sequencing instrument model and make | - | - |
| file type* | Controlled Vocabulary - file type (free text allowed) | The run data file model. | - | - |
| file checksum | String | The MD5 checksum of the file. | - | - |
| Raw Data File* | String | Name (or URI) of the raw data file generated by an assay. | - | - |
| submission date | String | Date in which run was submitted to ENA.Date of submission to ENA. | - | - |
| status | Controlled Vocabulary - status (free text allowed) | Status of submission to ENA. | - | - |
| accession | String | ENA run accession code. Provided by ENA after submission. | - | - |
Tags
Not specified Creators and SubmitterViews: 233 Downloads: 21
Created: 6th Nov 2022 at 10:06
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AttributionsNone
Related items
Projects: Bob's PhD project, SOP of the lab, ISA ENA export, For ssnape
Institutions: Default Institution
A project testing the export of ISA json files based on ENA checklists
Programme: This Project is not associated with a Programme
Public web page: Not specified
A second test investigation This one is based on a dummy yeast wgs
Submitter: Alice Alice
Studies: test_yeast_wgs
Assays: DNA extraction, DNA sequencing, Library preparation
Submitter: Alice Alice
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Test_investigation_biohackathon_2
Study: test_yeast_wgs
Input (Registered Sample List) *, nucleic acid sequencing (String) *, sequencing instrument (Controlled Vocabulary - sequencing instrument) *, file type (Controlled Vocabulary - file type) *, file checksum (String) , Raw Data File (String) *, submission date (String) , status (Controlled Vocabulary - status) , accession (String)
