lib prep sst
View samplesTemplate
Attributes
| Name | Type | Description | PID  | Unit |
|---|---|---|---|---|
| Input (Extract Name)* | Registered Sample List | Existing Samples in DataHub that represent input for this protocol. | - | - |
| library construction* | String | type of assay or experimental step performed. | - | - |
| library_construction_protocol | String | Free form text describing the protocol by which the sequencing library was constructed. | - | - |
| Title* | String | Short text that can be used to call out experiment records in searches or in displays. | - | - |
| design_description* | String | The design of the library including details of how it was constructed. | - | - |
| library source* | Controlled Vocabulary - library source (free text allowed) | The LIBRARY_SOURCE specifies the type of source material that is being sequenced. (SRA 1.2 documentation) | - | - |
| library strategy* | Controlled Vocabulary - library strategy (free text allowed) | Sequencing technique intended for this library (SRA 1.2 documentation) | - | - |
| library selection* | Controlled Vocabulary - library selection (free text allowed) | Whether any method was used to select for or against, enrich, or screen the material being sequenced. (SRA 1.2 documentation) | - | - |
| library layout | Controlled Vocabulary - library layout (free text allowed) | specifies whether to expect single, paired, or other configuration of reads. In the case of paired reads, information about the relative distance and orientation is specified. | - | - |
| insert size | String | Insert size for paired reads. | - | - |
| library name* | String | Name given to the generated library | - | - |
| submission date | String | Date in which experiment was submitted to ENA. | - | - |
| status | Controlled Vocabulary - status (free text allowed) | Status of submission to ENA. | - | - |
| accession | String | ENA experiment accession code. Provided by ENA after submission. | - | - |
Tags
Not specified Creators and SubmitterViews: 83 Downloads: 2
Created: 6th Nov 2022 at 10:02
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AttributionsNone
Related items
Projects: Bob's PhD project, SOP of the lab, ISA ENA export, For ssnape
Institutions: Default Institution
A project testing the export of ISA json files based on ENA checklists
Programme: This Project is not associated with a Programme
Public web page: Not specified
A second test investigation This one is based on a dummy yeast wgs
Submitter: Alice Alice
Studies: test_yeast_wgs
Assays: DNA extraction, DNA sequencing, Library preparation
Submitter: Alice Alice
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Test_investigation_biohackathon_2
Study: test_yeast_wgs
Input (Registered Sample List) *, library construction (String) *, library_construction_protocol (String) , Title (String) *, design_description (String) *, library source (Controlled Vocabulary - library source) *, library strategy (Controlled Vocabulary - library strategy) *, library selection (Controlled Vocabulary - library selection) *, library layout (Controlled Vocabulary - library layout) , insert size (String) , library name (String) *, submission date (String) , status (Controlled Vocabulary - status) , accession (String)
