Arabidopsis thaliana treatments
View samplesERC000011.xml 2021
Template
Attributes
| Name | Type | Description | PID  | Unit |
|---|---|---|---|---|
| Source Name* | String | Sources are considered as the starting biological material used in a study. | - | - |
| Title* | String | Short text that can be used to call out sample records in search results or in displays. | - | - |
| Description* | String | Free-form text describing the sample, its origin, and its method of isolation. | - | - |
| tax_id* | String | NCBI Taxonomy Identifier number ID. This is appropriate for individual organisms and some environmental samples. | - | - |
| organism | String | Provide a taxonomic information associated to the Source Biological material (for example, Species, genus, strain,....). Ideally, provide NCBI TaxID or NEWT identifier | - | - |
| cell_type | String | cell type from which the sample was obtained | - | - |
| dev_stage | String | if the sample was obtained from an organism in a specific developmental stage, it is specified with this qualifier | - | - |
| collection_date | String | The date of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid ISO8601 compliant times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008. | - | - |
| isolation_source | String | describes the physical, environmental and/or local geographical source of the biological sample from which the sample was derived | - | - |
| collected_by | String | name of persons or institute who collected the specimen | - | - |
| geographic location (country and/or sea) | Controlled Vocabulary - geographic location (country and/or sea) (free text allowed) | The geographical origin of the sample as defined by the country or sea. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html). | - | - |
| submission date | String | Date in which sample was submitted to ENA. | - | - |
| status | Controlled Vocabulary - status (free text allowed) | Status of submission to ENA. | - | - |
| accession | String | ENA sample accession code. Provided by ENA after submission. | - | - |
Tags
Not specifiedRelated items
Projects: Bob's PhD project, Crayfish
Institutions: Default Institution, Scilifelab, Sweden
This Programme groups all research projects supervised by Alice.
Projects: Bob's PhD project, SOP of the lab, For ssnape
Web page: Not specified
Programme: Alice’s research group
Public web page: Not specified
Submitter: Bob Bob
Studies: Arabidopsis thaliana
Assays: Library prep, Nucleic acid extraction, Sequencing
Nucleic acid sequencing and metabolomics and proteomics of Arabidopsis thaliana in specific experimental conditions to test a specific hypothesis.
Submitter: Bob Bob
Investigation: Bob's investigation
Assays: Library prep, Nucleic acid extraction, Sequencing
Source Name (String) *, Title (String) *, Description (String) *, tax_id (String) *, organism (String) , cell_type (String) , dev_stage (String) , germline (String) , tissue_lib (String) , tissue_type (String) , collection_date (String) , isolation_source (String) , lat_lon (String) , collected_by (String) , geographic location (country and/or sea) (Controlled Vocabulary - geographic location (country and/or sea)) , geographic location (region and locality) (String) , identified_by (String) , environmental_sample (Controlled Vocabulary - environmental_sample) , mating_type (String) , sex (String) , lab_host (String) , host scientific name (String) , bio_material (String) , culture_collection (String) , specimen_voucher (String) , cultivar (String) , ecotype (String) , isolate (String) , sub_species (String) , variety (String) , sub_strain (String) , cell_line (String) , serotype (String) , serovar (String) , strain (String) , submission date (String) , status (Controlled Vocabulary - status) , accession (String)
