Genome Assembly
Genome assembly
Attributes
| Name | Type | Description | PID  | Unit |
|---|---|---|---|---|
| Input (Raw Data File)* | Registered Sample List | Existing Samples in DataHub that represent input for this protocol. | - | - |
| sequence assembly protocol* | String | type of assay or experimental step performed. | - | - |
| FASTA* | String | derived data such as an assembly file | - | - |
| FASTA URL | String | Not specified | - | - |
| ASSEMBLYNAME* | String | Unique assembly name, user-provided | - | - |
| ASSEMBLY_TYPE* | Controlled Vocabulary - ENA ASSEMBLY_TYPE | Not specified | - | - |
| COVERAGE* | String | he estimated depth of sequencing coverage | - | - |
| PROGRAM* | String | The assembly program | - | - |
| PLATFORM* | String | The sequencing platform, or comma-separated list of platforms | - | - |
| MOLECULETYPE | String | ‘genomic DNA’, ‘genomic RNA’ or ‘viral cRNA’ | - | - |
Tags
Not specified Creators and SubmitterViews: 48 Downloads: 0
Created: 15th Sep 2025 at 13:06
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Institutions: Default Institution, Vlaams Instituut voor Biotechnologie, uppsala University, ILVO
Data from Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays https://doi.org/10.1186/s13059-015-0716-z
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Web page: Not specified
Test for MARS
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WGS, RNAsequencing and genotyping of founders lines
Genome Assembly
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Characterisation of founders lines
Study: Genome-seq_RNAseq_variants
Genome assembly
Input (Registered Sample List) *, sequence assembly protocol (String) *, FASTA (String) *, FASTA URL (String) , ASSEMBLYNAME (String) *, ASSEMBLY_TYPE (Controlled Vocabulary - ENA ASSEMBLY_TYPE) *, COVERAGE (String) *, PROGRAM (String) *, PLATFORM (String) *, MOLECULETYPE (String)
