seq
View samplesAttributes
| Name | Type | Description | PID  | Unit |
|---|---|---|---|---|
| Input* | Registered Sample List | Existing Samples in DataHub that represent input for this protocol. | - | - |
| nucleic acid sequencing* | String | type of assay or experimental step performed. | - | - |
| sequencing instrument* | Controlled Vocabulary - sequencing instrument (free text allowed) | a parameter to report the sequencing instrument model and make | - | - |
| file type* | Controlled Vocabulary - file type (free text allowed) | The run data file model. | - | - |
| file checksum | String | The MD5 checksum of the file. | - | - |
| Raw Data File* | String | Name (or URI) of the raw data file generated by an assay. | - | - |
| submission date | String | Date in which run was submitted to ENA.Date of submission to ENA. | - | - |
| status | Controlled Vocabulary - status (free text allowed) | Status of submission to ENA. | - | - |
| accession | String | ENA run accession code. Provided by ENA after submission. | - | - |
Tags
Not specifiedRelated items
Projects: Environmental stimuli on yeast, Mutant re-sequencing
Institutions: Default Institution
Projects: Environmental stimuli on yeast, Mutant re-sequencing
Web page: Not specified
Programme: Claire's research group
Public web page: Not specified
Characterizing the hi-per mutant line
Submitter: claire s
Studies: Study - Mutant re-sequencing
Assays: Assay - DNA extraction, Assay - Library preparation, Assay - Sequencing
This assay follows the standard design for whole genome sequencing at the Institute. Samples were sent to the sequencing facility.
Submitter: David s
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation - hi-per characterization
Study: Study - Mutant re-sequencing
Input (Registered Sample List) *, nucleic acid sequencing (String) *, sequencing instrument (Controlled Vocabulary - sequencing instrument) *, file type (Controlled Vocabulary - file type) *, file checksum (String) , Raw Data File (String) *, submission date (String) , status (Controlled Vocabulary - status) , accession (String)
