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Template
Attributes
| Name | Type | Description | PID  | Unit |
|---|---|---|---|---|
| Source Name* | String | Sources are considered as the starting biological material used in a study. | - | - |
| organism* | Controlled Vocabulary - organism (free text allowed) | A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs. E.g Drosophila melanogaster. | http://purl.obolibrary.org/obo/OBI_0100026 | - |
| organism part* | Controlled Vocabulary - organism part (free text allowed) | The part of organism's anatomy or substance arising from an organism from which the biomaterial was derived, excludes cells. E.g. tissue, organ, system, sperm, blood or body location (arm). | http://www.ebi.ac.uk/efo/EFO_0000635 | - |
| developmental stage* | Controlled Vocabulary - developmental stage (free text allowed) | A developmental stage is spatiotemporal region encompassing some part of the life cycle of an organism, e.g. blastula stage | http://www.ebi.ac.uk/efo/EFO_0000399 | - |
| age* | Controlled Vocabulary - age (free text allowed) | A temporal measurement of the time period elapsed since an identifiable point in the life cycle of an organism. If a developmental stage is specified, the identifiable point would be the beginning of that stage. Otherwise the identifiable point must be specified such as planting (e.g. 3 days post planting). | http://www.ebi.ac.uk/efo/EFO_0000246 | - |
| genotype* | Controlled Vocabulary - genotype (free text allowed) | The total sum of the genetic information of an organism that is known and relevant to the experiment being performed, including chromosomal, plasmid, viral or other genetic material which has been introduced into the organism either prior to or during the experiment. | http://www.ebi.ac.uk/efo/EFO_0000513 | - |
| cultivar* | String | A cultivated plant variety selected and given a name because it has desirable characteristics that distinguish it from otherwise similar plants of the same species. | http://www.ebi.ac.uk/efo/EFO_0005136 | - |
| enviromental stress treatment | String | Environmental stress is a treatment where some aspect of the environment is perturbed in order to stress the organism or culture, e.g. change in temperature, change in watering regime. | http://www.ebi.ac.uk/efo/EFO_0000470 | - |
| growth condition | Controlled Vocabulary - growth condition (free text allowed) | A role that a material entity can play which enables particular conditions used to grow organisms or parts of the organism. This includes isolated environments such as cultures and open environments such as field studies. | http://www.ebi.ac.uk/efo/EFO_0000523 | - |
| strain | String | A population of organisms that is geneticaly different from others of the same species and possessing a set of defined characteristics. | http://www.ebi.ac.uk/efo/EFO_0005135 | - |
| material type* | Controlled Vocabulary - material type (free text allowed) | Used as an attribute column following Source Name, Sample Name, Extract Name, or Labeled Extract Name. This column contains terms describing the type of each material, for examples: whole organism, organism part, cell, total RNA. | - | - |
Tags
Not specifiedRelated items
Projects: Environmental stimuli on yeast, Mutant re-sequencing
Institutions: Default Institution
Projects: Environmental stimuli on yeast, Mutant re-sequencing
Web page: Not specified
Programme: Claire's research group
Public web page: Not specified
Characterization of Saccharomyces cerevisiae to heat stress conditions
Submitter: claire s
Studies: Study - transcriptomic response
Assays: Assay - Library preparation, Assay - RNA extraction, Assay - RNA sequencing
Exploring transcriptomic changes in Saccharomyces cerevisiae upon heat stress
Submitter: David s
Investigation: Investigation - Heat stress
Assays: Assay - Library preparation, Assay - RNA extraction, Assay - RNA sequencing
Source Name (String) *, organism (Controlled Vocabulary - organism) *, organism part (Controlled Vocabulary - organism part) *, developmental stage (Controlled Vocabulary - developmental stage) *, age (Controlled Vocabulary - age) *, genotype (Controlled Vocabulary - genotype) *, cultivar (String) *, cultured cell (Controlled Vocabulary - cultured cell) , cell type (Controlled Vocabulary - cell type) , clinical history (Controlled Vocabulary - clinical history) , chemical entity (Controlled Vocabulary - chemical entity) , diet (Controlled Vocabulary - diet) , disease staging (Controlled Vocabulary - disease staging) , dose (String) , ecotype (Controlled Vocabulary - ecotype) , enviromental history (String) , enviromental stress treatment (String) , fraction (String) , genetic modification (Controlled Vocabulary - genetic modification) , growth condition (Controlled Vocabulary - growth condition) , immunoprecipitate (Controlled Vocabulary - immunoprecipitate) , individual (String) , infection (String) , inferred cell type (String) , injury (Controlled Vocabulary - injury) , irradiate (String) , karyotype (String) , phenotype (Controlled Vocabulary - phenotype) , RNA interference (String) , replicate (Controlled Vocabulary - replicate) , sex (Controlled Vocabulary - sex) , single cell identifier (String) , specimen with known storage state (Controlled Vocabulary - specimen with known storage state) , strain (String) , time (String) , tumor grading (Controlled Vocabulary - tumor grading) , material type (Controlled Vocabulary - material type) *
