HoloFood in DataHub
Experiment View
OverviewExample
Programme: Example with HoloFood project
SEEK ID: https://datahub-test.elixir-belgium.org/projects/86
Public web page: Not specified
Organisms: No Organisms specified
Elixir Belgium PALs: No PALs for this Project
Project created: 20th Mar 2026
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Institutions: Default Institution, Vlaams Instituut voor Biotechnologie, uppsala University, ILVO, VIB
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Institutions: Ghent University, Vlaams Instituut voor Biotechnologie, VIB
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Institutions: Vlaams Instituut voor Biotechnologie, Ghent University, Chalmers, VIB
https://orcid.org/0000-0003-0459-7142
This is an example of how multi-omics study can be organised in DataHub. The HoloFood project is used as an example here.
Projects: HoloFood in DataHub
Web page: Not specified
ROR ID: Not specified
Department: Not specified
Country: Not specified
City: Not specified
Web page: Not specified
Multi-modal investigation in chickens
Hologenomic approach to understand the impact of host–microbiota interactions on chicken production by analysing multiomic data, phenotypic characteristics, and associated metadata in response to novel feeds.
Submitter: Flora D'Anna
Investigation: Multi-omics in chickens
Assays: Chromatography, Library for host transcriptomics, Mass spectrometry, Metabolites extraction, Metabolomics, Transcriptome sequencing, Transcriptomics
Library for host transcriptomics
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi-omics in chickens
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi-omics in chickens
HoloFood Chicken Host Transcriptome
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi-omics in chickens
Transcriptome sequencing
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi-omics in chickens
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi-omics in chickens
Library construction for HoloFood shotgun chicken transcriptomics
Creator: Flora D'Anna
Submitter: Flora D'Anna
HoloFood chromatography
Creator: Flora D'Anna
Submitter: Flora D'Anna
HoloFood metabolites extraction
Creator: Flora D'Anna
Submitter: Flora D'Anna
Abstract (Expand)
Authors: Núria Tous, Sofia Marcos, Farshad Goodarzi Boroojeni, Ana Pérez de Rozas, Jürgen Zentek, Andone Estonba, Dorthe Sandvang, M. Thomas P. Gilbert, Enric Esteve-Garcia, Robert Finn, Antton Alberdi, Joan Tarradas
Date Published: 6th Sep 2022
Publication Type: Peer Review
'Assay - Data file' Sample Type linked to Assay 'Transcriptome sequencing'.
Input (title) (Registered Sample List) *, nucleic acid sequencing (String) *, Raw Data File (String) *, file_name (String) *, file_type (Controlled Vocabulary - file_type) *, run_accession (String) , fastq_ftp (String) , submitted_bytes (String) , submitted_ftp (String) , bam_ftp (String)
Not specified
'Assay - Material' Sample Type linked to Assay 'Library for host transcriptomics'.
Input (Sample Name) (Registered Sample List) *, protocol (Registered SOP) *, title (String) *, library_name (String) *, design_description (String) *, library_source (Controlled Vocabulary - library_source) *, library_strategy (Controlled Vocabulary - library_strategy) *, library_selection (Controlled Vocabulary - library_selection) *, library_layout (Controlled Vocabulary - library_layout) *, platform (Controlled Vocabulary - platform) *, instrument_model (Controlled Vocabulary - instrument_model) *, experiment accession (String)
Not specified
'Assay - Data file' Sample Type linked to Assay 'Mass spectrometry'.
Input (Labeled Extract Name) (Registered Sample List) *, MS Protocol (String) *, scan polarity (Controlled Vocabulary - deCYPher_MS_scan-polarity) , scan m/z range (String) , instrument (String) , ion source (String) , mass analyzer (String) , MS Assay Name (String) *, Raw Spectral Data File (String) *, Data transformation protocol (String) , Derived Spectral Data File (String) , Metabolite Identification protocol (String) , Metabolite Assignment File (String)
Not specified
'Assay - Material' Sample Type linked to Assay 'Chromatography'.
Input (Extract Name) (Registered Sample List) *, Chromatography protocol (Registered SOP) , Chromatography Instrument (String) , Column model (String) , Column type (String) , Labeled Extract Name (String) *
Not specified
'Assay - Material' Sample Type linked to Assay 'Metabolites extraction'.
Input (Sample Name) (Registered Sample List) *, Extraction (Registered SOP) , Post extraction (String) , Derivatization (Controlled Vocabulary - deCYPher_metabolomics_derivatization) , Extract Name (String) *
Not specified
Input (Registered Sample List) *, Chromatography protocol (Registered SOP) , Chromatography Instrument (String) , Column model (String) , Column type (String) , Labeled Extract Name (String)
