Mutant re-sequencing
Experiment View
OverviewProgramme: Claire's research group
SEEK ID: https://datahub-test.elixir-belgium.org/projects/4
Public web page: Not specified
Elixir Belgium PALs: No PALs for this Project
Project created: 19th Jul 2022
TagsThis item has not yet been tagged.
Related items
Projects: Environmental stimuli on yeast, Mutant re-sequencing
Institutions: Default Institution
Projects: Environmental stimuli on yeast, Mutant re-sequencing
Institutions: Default Institution
Projects: Environmental stimuli on yeast, Mutant re-sequencing
Web page: Not specified
Characterizing the hi-per mutant line
Submitter: claire s
Studies: Study - Mutant re-sequencing
Assays: Assay - DNA extraction, Assay - Library preparation, Assay - Sequencing
In this Study we are re-sequencing a mutant line from our group to identify potential off target mutations.
Submitter: David s
Investigation: Investigation - hi-per characterization
Assays: Assay - DNA extraction, Assay - Library preparation, Assay - Sequencing
This assay performs the DNA extraction
Submitter: David s
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation - hi-per characterization
Study: Study - Mutant re-sequencing
The assay design is based on ENA's requirements
Submitter: David s
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation - hi-per characterization
Study: Study - Mutant re-sequencing
This assay follows the standard design for whole genome sequencing at the Institute. Samples were sent to the sequencing facility.
Submitter: David s
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation - hi-per characterization
Study: Study - Mutant re-sequencing
Download
Input (Registered Sample List) *, nucleic acid sequencing (String) *, sequencing instrument (Controlled Vocabulary - sequencing instrument (free text allowed)) *, file type (Controlled Vocabulary - file type (free text allowed)) *, file checksum (String) , Raw Data File (String) *, submission date (String) , status (Controlled Vocabulary - status (free text allowed)) , accession (String)
Not specified
Input (Registered Sample List) *, library construction (String) *, Title (String) *, design_description (String) *, library source (Controlled Vocabulary - library source (free text allowed)) *, library strategy (Controlled Vocabulary - library strategy (free text allowed)) *, library selection (Controlled Vocabulary - library selection (free text allowed)) *, library layout (Controlled Vocabulary - library layout (free text allowed)) , insert size (String) , library name (String) *, submission date (String) , status (Controlled Vocabulary - status (free text allowed)) , accession (String)
Not specified
Input (Registered Sample List) *, nucleic acid extraction (String) *, sample volume or weight for DNA extraction (String) , Extract Name (String) *
Not specified
most optional attributes removed
Source Name (String) *, Title (String) *, Description (String) *, tax_id (String) *, organism (String) , ploidy (Controlled Vocabulary - ploidy (free text allowed)) *, number of replicons (Integer) *, estimated size (Integer) *, collection date (String) *, geographic location (country and/or sea) (Controlled Vocabulary - geographic location (country and/or sea) (free text allowed)) *, geographic location (latitude) (String) *, geographic location (longitude) (String) *, isolation and growth condition (String) *, plant structure (Controlled Vocabulary - plant structure (free text allowed)) *, plant developmental stage (Controlled Vocabulary - plant developmental stage (free text allowed)) *, plant growth medium (String) *, submission date (String) , status (Controlled Vocabulary - status (free text allowed)) , accession (String)
Not specified
most optional attributes were removed
Input (Registered Sample List) *, sample collection (String) *, sample storage location (String) , Sample Name (String) *
Not specified
