Example with HoloFood project
This is an example of how multi-omics study can be organised in DataHub. The HoloFood project is used as an example here.
Web page: Not specified
Funding details: Related items
Projects: ISA ENA export, testing template created by user in SP, Second project, Genetic properties of the MAGIC maize population, CODEX on TMA from metastatic uveal melanoma biopsies, Test project seek-1.15, WP2 - Bioprospecting and functional expression of CYPs, WP1 - Learning techniques fit for industrial biotechnology, deCYPher Composable Elements, deCYPher experiments templates, Templates - EGA Data Access Committee @ VIB, Croockshanks' PhD, EGA submissions - H. Granger Lab, EGA submissions - H. Potter Lab, HoloFood in DataHub, COMPASS
Institutions: Default Institution, Vlaams Instituut voor Biotechnologie, uppsala University, ILVO, VIB
Projects: Kevin's Test project, Project Test Permissions, Test program seek-1.14, Test Project 07-11-2023, Test project seek-1.15, ENA Upload tool, Project April 17, CODEX on TMA from metastatic uveal melanoma biopsies, Assessment of non-ribosomal protein synthetase accuracy of cyclic lipodepsipeptides, WP2 - Bioprospecting and functional expression of CYPs, WP1 - Learning techniques fit for industrial biotechnology, AG OMICS, deCYPher Composable Elements, deCYPher experiments templates, WP3 - MCFs for flavonoids and terpenoids, Templates - EGA Data Access Committee @ VIB, Croockshanks' PhD, EGA submissions - H. Granger Lab, EGA submissions - H. Potter Lab, HoloFood in DataHub
Institutions: Ghent University, Vlaams Instituut voor Biotechnologie, VIB
Projects: ENA Upload tool, Membrane interactions of cyclic lipodepsipeptides, Assessment of non-ribosomal protein synthetase accuracy of cyclic lipodepsipeptides, Synthesis of non-natural analogues of CLiPs, WP2 - Bioprospecting and functional expression of CYPs, deCYPher Composable Elements, deCYPher experiments templates, WP4 - Sustainable bio-based production of flavonoids and terpenoids, WP3 - MCFs for flavonoids and terpenoids, Project: Search when changing attribute name, Test project seek-1.15, Leiden, AG OMICS, WP1 - Learning techniques fit for industrial biotechnology, Templates - EGA Data Access Committee @ VIB, EGA submissions - H. Potter Lab, EGA submissions - H. Granger Lab, Croockshanks' PhD, Testing the ISA tag 'Input', HoloFood in DataHub, COMPASS
Institutions: Vlaams Instituut voor Biotechnologie, Ghent University, Chalmers, VIB
https://orcid.org/0000-0003-0459-7142
Example
Programme: Example with HoloFood project
Public web page: Not specified
ROR ID: Not specified
Department: Not specified
Country: Not specified
City: Not specified
Web page: Not specified
Multi-modal investigation in chickens
Hologenomic approach to understand the impact of host–microbiota interactions on chicken production by analysing multiomic data, phenotypic characteristics, and associated metadata in response to novel feeds.
Submitter: Flora D'Anna
Investigation: Multi-omics in chickens
Assays: Chromatography, Library for host transcriptomics, Mass spectrometry, Metabolites extraction, Metabolomics, Transcriptome sequencing, Transcriptomics
Library for host transcriptomics
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi-omics in chickens
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi-omics in chickens
HoloFood Chicken Host Transcriptome
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi-omics in chickens
Transcriptome sequencing
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi-omics in chickens
Submitter: Flora D'Anna
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Multi-omics in chickens
Library construction for HoloFood shotgun chicken transcriptomics
Creator: Flora D'Anna
Submitter: Flora D'Anna
HoloFood chromatography
Creator: Flora D'Anna
Submitter: Flora D'Anna
HoloFood metabolites extraction
Creator: Flora D'Anna
Submitter: Flora D'Anna
Abstract (Expand)
Authors: Núria Tous, Sofia Marcos, Farshad Goodarzi Boroojeni, Ana Pérez de Rozas, Jürgen Zentek, Andone Estonba, Dorthe Sandvang, M. Thomas P. Gilbert, Enric Esteve-Garcia, Robert Finn, Antton Alberdi, Joan Tarradas
Date Published: 6th Sep 2022
Publication Type: Peer Review
