Claire's research group

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claire s

Projects: Environmental stimuli on yeast, Mutant re-sequencing

Institutions: Default Institution

David s

Projects: Environmental stimuli on yeast, Mutant re-sequencing

Institutions: Default Institution

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Mutant re-sequencing

No description specified

Programme: Claire's research group

Public web page: Not specified

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Environmental stimuli on yeast

No description specified

Programme: Claire's research group

Public web page: Not specified

Organisms: Not specified

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Default Institution

Country: United Kingdom

City: Not specified

Web page: Not specified

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Investigation - Chemical treatment

Environmental stimuli on yeast

Exploring the responses of Saccharomyces cerevisiae to compound X

Submitter: David s

Studies: Study - expression response

Assays: Assay - Library, Assay - RNA extraction, Assay - RNA sequencing

Snapshots: No snapshots

Created: 19th Jul 2022 at 13:11

Investigation - hi-per characterization

Mutant re-sequencing

Characterizing the hi-per mutant line

Submitter: claire s

Studies: Study - Mutant re-sequencing

Assays: Assay - DNA extraction, Assay - Library preparation, Assay - Sequencing

Snapshots: No snapshots

Created: 19th Jul 2022 at 09:41

Investigation - Heat stress

Environmental stimuli on yeast

Characterization of Saccharomyces cerevisiae to heat stress conditions

Submitter: claire s

Studies: Study - transcriptomic response

Assays: Assay - Library preparation, Assay - RNA extraction, Assay - RNA sequencing

Snapshots: No snapshots

Created: 19th Jul 2022 at 08:02

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Study - expression response

Environmental stimuli on yeast

Exploring transcriptomic changes in Saccharomyces cerevisiae upon chemical X application

Submitter: David s

Investigation: Investigation - Chemical treatment

Assays: Assay - Library, Assay - RNA extraction, Assay - RNA sequencing

Snapshots: No snapshots

Created: 19th Jul 2022 at 13:12

Study - Mutant re-sequencing

Mutant re-sequencing

In this Study we are re-sequencing a mutant line from our group to identify potential off target mutations.

Submitter: David s

Investigation: Investigation - hi-per characterization

Assays: Assay - DNA extraction, Assay - Library preparation, Assay - Sequencing

Snapshots: No snapshots

Created: 19th Jul 2022 at 09:49

Study - transcriptomic response

Environmental stimuli on yeast

Exploring transcriptomic changes in Saccharomyces cerevisiae upon heat stress

Submitter: David s

Investigation: Investigation - Heat stress

Assays: Assay - Library preparation, Assay - RNA extraction, Assay - RNA sequencing

Snapshots: No snapshots

Created: 19th Jul 2022 at 08:11, Last updated: 19th Jul 2022 at 08:39

Showing 5 out of a possible 9 Assays Advanced Assays list for this Programme with search and filtering

Assay - RNA extraction

Environmental stimuli on yeast

Performing RNA extraction of treated and control cultures

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - Heat stress

Study: Study - transcriptomic response

SOPs: SOPtest_1

Snapshots: No snapshots

Created: 19th Jul 2022 at 08:19, Last updated: 19th Jul 2022 at 09:28

Assay - DNA extraction

Mutant re-sequencing

This assay performs the DNA extraction

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - hi-per characterization

Study: Study - Mutant re-sequencing

SOPs: DNA extraction

Snapshots: No snapshots

Created: 19th Jul 2022 at 09:51, Last updated: 19th Jul 2022 at 09:52

Assay - RNA extraction

Environmental stimuli on yeast

Performing RNA extraction of chemically treated and control cultures

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - Chemical treatment

Study: Study - expression response

SOPs: SOPtest_1

Snapshots: No snapshots

Created: 19th Jul 2022 at 13:15, Last updated: 19th Jul 2022 at 13:16

Assay - Library preparation

Environmental stimuli on yeast

Libraries were prepared following the recommendation of the sequencing facility

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - Heat stress

Study: Study - transcriptomic response

SOPs: SOPtest_2

Snapshots: No snapshots

Created: 19th Jul 2022 at 08:21, Last updated: 19th Jul 2022 at 09:30

Assay - Library preparation

Mutant re-sequencing

The assay design is based on ENA's requirements

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - hi-per characterization

Study: Study - Mutant re-sequencing

SOPs: Library preparation

Snapshots: No snapshots

Created: 19th Jul 2022 at 09:53, Last updated: 19th Jul 2022 at 09:54

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Showing 5 out of a possible 9 SOPs Advanced SOPs list for this Programme with search and filtering

DNA sequencing

Mutant re-sequencing

The protocol that describes the DNA sequencing procedures

Creator: David s

Submitter: David s

Investigations: Investigation - hi-per characterization

Studies: Study - Mutant re-sequencing

Assays: Assay - Sequencing

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Created: 19th Jul 2022 at 09:45

Library preparation

Mutant re-sequencing

A protocol describing the library preparation step

Creator: David s

Submitter: David s

Investigations: Investigation - hi-per characterization and 1 hidden item

Studies: Study - Mutant re-sequencing and 1 hidden item

Assays: Assay - Library preparation and 1 hidden item

Download

Created: 19th Jul 2022 at 09:44

DNA extraction

Mutant re-sequencing

A protocol describing the DNA extraction step

Creator: David s

Submitter: David s

Investigations: Investigation - hi-per characterization and 2 hidden items

Studies: Study - Mutant re-sequencing and 2 hidden items

Assays: Assay - DNA extraction and 2 hidden items

Download

Created: 19th Jul 2022 at 09:43

Sample collection

Mutant re-sequencing

No description specified

Creator: David s

Submitter: David s

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

Download

Created: 19th Jul 2022 at 09:42

SOPtest_1

Environmental stimuli on yeast

No description specified

Creator: David s

Submitter: David s

Investigations: Investigation - Chemical treatment, Investigation - Heat stress

Studies: Study - expression response, Study - transcriptomic response

Assays: Assay - RNA extraction, Assay - RNA extraction

Download

Created: 19th Jul 2022 at 08:07, Last updated: 19th Jul 2022 at 08:10

1 hidden item

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Showing 5 out of a possible 164 Samples Advanced Samples list for this Programme with search and filtering

WT library

Mutant re-sequencing

Type:

Creators: None

Submitter: David s

Created: 19th Jul 2022 at 09:54, Last updated: 17th Oct 2023 at 07:58

8_R1.fastq.gz

Environmental stimuli on yeast

Type:

Creators: None

Submitter: David s

Created: 19th Jul 2022 at 13:21

8_R2.fastq.gz

Environmental stimuli on yeast

Type:

Creators: None

Submitter: David s

Created: 19th Jul 2022 at 13:21

9_R1.fastq.gz

Environmental stimuli on yeast

Type:

Creators: None

Submitter: David s

Created: 19th Jul 2022 at 13:21

9_R2.fastq.gz

Environmental stimuli on yeast

Type:

Creators: None

Submitter: David s

Created: 19th Jul 2022 at 13:21

View all 164 Samples