David s

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About David s:

No description specified

SEEK ID: https://datahub-test.elixir-belgium.org/people/8

Location: United Kingdom

ORCID: Not specified

Joined: 19th Jul 2022

Expertise: Not specified

Tools: Not specified

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Related items

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Claire's research group

No description specified

Projects: Environmental stimuli on yeast, Mutant re-sequencing

Web page: Not specified

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Mutant re-sequencing

No description specified

Programme: Claire's research group

Public web page: Not specified

Organisms: Not specified

Environmental stimuli on yeast

No description specified

Programme: Claire's research group

Public web page: Not specified

Organisms: Not specified

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Default Institution

Country: United Kingdom

City: Not specified

Web page: Not specified

Advanced Investigations list for this Person with search and filtering

Investigation - Chemical treatment

Environmental stimuli on yeast

Exploring the responses of Saccharomyces cerevisiae to compound X

Submitter: David s

Studies: Study - expression response

Assays: Assay - Library, Assay - RNA extraction, Assay - RNA sequencing

Snapshots: No snapshots

Created: 19th Jul 2022 at 13:11

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Study - expression response

Environmental stimuli on yeast

Exploring transcriptomic changes in Saccharomyces cerevisiae upon chemical X application

Submitter: David s

Investigation: Investigation - Chemical treatment

Assays: Assay - Library, Assay - RNA extraction, Assay - RNA sequencing

Snapshots: No snapshots

Created: 19th Jul 2022 at 13:12

Study - Mutant re-sequencing

Mutant re-sequencing

In this Study we are re-sequencing a mutant line from our group to identify potential off target mutations.

Submitter: David s

Investigation: Investigation - hi-per characterization

Assays: Assay - DNA extraction, Assay - Library preparation, Assay - Sequencing

Snapshots: No snapshots

Created: 19th Jul 2022 at 09:49

Study - transcriptomic response

Environmental stimuli on yeast

Exploring transcriptomic changes in Saccharomyces cerevisiae upon heat stress

Submitter: David s

Investigation: Investigation - Heat stress

Assays: Assay - Library preparation, Assay - RNA extraction, Assay - RNA sequencing

Snapshots: No snapshots

Created: 19th Jul 2022 at 08:11, Last updated: 19th Jul 2022 at 08:39

Showing 5 out of a possible 9 Assays Advanced Assays list for this Person with search and filtering

Assay - RNA extraction

Environmental stimuli on yeast

Performing RNA extraction of treated and control cultures

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - Heat stress

Study: Study - transcriptomic response

Organisms: No organisms

Protocols: SOPtest_1

Data files: No Data files

Snapshots: No snapshots

Created: 19th Jul 2022 at 08:19, Last updated: 19th Jul 2022 at 09:28

Assay - DNA extraction

Mutant re-sequencing

This assay performs the DNA extraction

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - hi-per characterization

Study: Study - Mutant re-sequencing

Organisms: No organisms

Protocols: DNA extraction

Data files: No Data files

Snapshots: No snapshots

Created: 19th Jul 2022 at 09:51, Last updated: 19th Jul 2022 at 09:52

Assay - RNA extraction

Environmental stimuli on yeast

Performing RNA extraction of chemically treated and control cultures

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - Chemical treatment

Study: Study - expression response

Organisms: No organisms

Protocols: SOPtest_1

Data files: No Data files

Snapshots: No snapshots

Created: 19th Jul 2022 at 13:15, Last updated: 19th Jul 2022 at 13:16

Assay - Library preparation

Environmental stimuli on yeast

Libraries were prepared following the recommendation of the sequencing facility

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - Heat stress

Study: Study - transcriptomic response

Organisms: No organisms

Protocols: SOPtest_2

Data files: No Data files

Snapshots: No snapshots

Created: 19th Jul 2022 at 08:21, Last updated: 19th Jul 2022 at 09:30

Assay - Library preparation

Mutant re-sequencing

The assay design is based on ENA's requirements

Submitter: David s

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation - hi-per characterization

Study: Study - Mutant re-sequencing

Organisms: No organisms

Protocols: Library preparation

Data files: No Data files

Snapshots: No snapshots

Created: 19th Jul 2022 at 09:53, Last updated: 19th Jul 2022 at 09:54

View all 9 Assays

Showing 5 out of a possible 9 Protocols Advanced Protocols list for this Person with search and filtering

DNA sequencing

Mutant re-sequencing

The protocol that describes the DNA sequencing procedures

Creator: David s

Submitter: David s

Investigations: Investigation - hi-per characterization

Studies: Study - Mutant re-sequencing

Assays: Assay - Sequencing

Download

Created: 19th Jul 2022 at 09:45

Views: 320, Downloads: 13

Library preparation

Mutant re-sequencing

A protocol describing the library preparation step

Creator: David s

Submitter: David s

Investigations: Investigation - hi-per characterization and 1 hidden item

Studies: Study - Mutant re-sequencing and 1 hidden item

Assays: Assay - Library preparation and 1 hidden item

Download

Created: 19th Jul 2022 at 09:44

Views: 291, Downloads: 7

DNA extraction

Mutant re-sequencing

A protocol describing the DNA extraction step

Creator: David s

Submitter: David s

Investigations: Investigation - hi-per characterization and 1 hidden item

Studies: Study - Mutant re-sequencing and 1 hidden item

Assays: Assay - DNA extraction and 1 hidden item

Download

Created: 19th Jul 2022 at 09:43

Views: 337, Downloads: 10

Sample collection

Mutant re-sequencing

No description specified

Creator: David s

Submitter: David s

Investigations: 1 hidden item

Studies: 1 hidden item

Assays: 1 hidden item

Download

Created: 19th Jul 2022 at 09:42

Views: 290, Downloads: 5

SOPtest_1

Environmental stimuli on yeast

No description specified

Creator: David s

Submitter: David s

Investigations: Investigation - Chemical treatment, Investigation - Heat stress

Studies: Study - expression response, Study - transcriptomic response

Assays: Assay - RNA extraction, Assay - RNA extraction

Download

Created: 19th Jul 2022 at 08:07, Last updated: 19th Jul 2022 at 08:10

Views: 303, Downloads: 2

1 hidden item

View all 9 Protocols

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15 hidden items

Showing 5 out of a possible 164 Samples Advanced Samples list for this Person with search and filtering

WT library

Mutant re-sequencing

Type:

Creators: None

Submitter: David s

Created: 19th Jul 2022 at 09:54, Last updated: 17th Oct 2023 at 07:58

8_R1.fastq.gz

Environmental stimuli on yeast

Type:

Creators: None

Submitter: David s

Created: 19th Jul 2022 at 13:21

8_R2.fastq.gz

Environmental stimuli on yeast

Type:

Creators: None

Submitter: David s

Created: 19th Jul 2022 at 13:21

9_R1.fastq.gz

Environmental stimuli on yeast

Type:

Creators: None

Submitter: David s

Created: 19th Jul 2022 at 13:21

9_R2.fastq.gz

Environmental stimuli on yeast

Type:

Creators: None

Submitter: David s

Created: 19th Jul 2022 at 13:21

View all 164 Samples