David s
SEEK ID: https://datahub-test.elixir-belgium.org/people/8
Location:
United Kingdom
ORCID: Not specified
Joined: 19th Jul 2022
Expertise: Not specified
Tools: Not specified
Roles
Project administrator
Their tagsRelated items
Projects: Environmental stimuli on yeast, Mutant re-sequencing
Web page: Not specified
Programme: Claire's research group
Public web page: Not specified
Programme: Claire's research group
Public web page: Not specified
Exploring the responses of Saccharomyces cerevisiae to compound X
Submitter: David s
Studies: Study - expression response
Assays: Assay - Library, Assay - RNA extraction, Assay - RNA sequencing
Exploring transcriptomic changes in Saccharomyces cerevisiae upon chemical X application
Submitter: David s
Investigation: Investigation - Chemical treatment
Assays: Assay - Library, Assay - RNA extraction, Assay - RNA sequencing
In this Study we are re-sequencing a mutant line from our group to identify potential off target mutations.
Submitter: David s
Investigation: Investigation - hi-per characterization
Assays: Assay - DNA extraction, Assay - Library preparation, Assay - Sequencing
Exploring transcriptomic changes in Saccharomyces cerevisiae upon heat stress
Submitter: David s
Investigation: Investigation - Heat stress
Assays: Assay - Library preparation, Assay - RNA extraction, Assay - RNA sequencing
Performing RNA extraction of treated and control cultures
Submitter: David s
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation - Heat stress
This assay performs the DNA extraction
Submitter: David s
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation - hi-per characterization
Study: Study - Mutant re-sequencing
Performing RNA extraction of chemically treated and control cultures
Submitter: David s
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation - Chemical treatment
Study: Study - expression response
Libraries were prepared following the recommendation of the sequencing facility
Submitter: David s
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation - Heat stress
The assay design is based on ENA's requirements
Submitter: David s
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation - hi-per characterization
Study: Study - Mutant re-sequencing
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Input (Registered Sample List) *, nucleic acid sequencing (String) *, sequencing instrument (Controlled Vocabulary - sequencing instrument (free text allowed)) *, Assay Name (String) *, Technology type (Controlled Vocabulary - Technology type (free text allowed)) *, Raw Data File (String) *
Not specified
Input (Registered Sample List) *, library construction (String) *, library source (Controlled Vocabulary - library source (free text allowed)) *, library strategy (Controlled Vocabulary - library strategy (free text allowed)) *, library selection (Controlled Vocabulary - library selection (free text allowed)) *, library layout (Controlled Vocabulary - library layout (free text allowed)) *, library name (String) *
Not specified
Input (Registered Sample List) *, nucleic acid extraction (String) *, Extract Name (String) *, Material type (Controlled Vocabulary - Material type (free text allowed)) *
Not specified
Source Name (String) *, organism (Controlled Vocabulary - organism (free text allowed)) *, organism part (Controlled Vocabulary - organism part (free text allowed)) *, developmental stage (Controlled Vocabulary - developmental stage (free text allowed)) *, age (Controlled Vocabulary - age (free text allowed)) *, genotype (Controlled Vocabulary - genotype (free text allowed)) *, cultivar (String) *, enviromental stress treatment (String) , growth condition (Controlled Vocabulary - growth condition (free text allowed)) , strain (String) , material type (Controlled Vocabulary - material type (free text allowed)) *
Not specified
Input (Registered Sample List) *, sample collection (String) *, Sample Name (String) *, material type (Controlled Vocabulary - material type (free text allowed)) *
Not specified
