Niels Geudens
SEEK ID: https://datahub-test.elixir-belgium.org/people/46
ORCID:
https://orcid.org/0000-0003-0459-7142
Joined: 18th Apr 2024
Expertise: Not specified
Tools: Not specified
Roles
Admin
Project administrator
- Membrane interactions of cyclic lipodepsipeptides
- Assessment of non-ribosomal protein synthetase accuracy of cyclic lipodepsipeptides
- Synthesis of non-natural analogues of CLiPs
- WP2 - Bioprospecting and functional expression of CYPs
- deCYPher Composable Elements
- deCYPher experiments templates
- WP1 - Learning techniques fit for industrial biotechnology
- WP4 - Sustainable bio-based production of flavonoids and terpenoids
- WP3 - MCFs for flavonoids and terpenoids
- Project: Search when changing attribute name
- Leiden
- AG OMICS
Programme administrator
Their tagsRelated items
Test
Projects: WP2 - Bioprospecting and functional expression of CYPs, deCYPher Composable Elements, deCYPher experiments templates, WP1 - Learning techniques fit for industrial biotechnology, WP4 - Sustainable bio-based production of flavonoids and terpenoids, WP3 - MCFs for flavonoids and terpenoids
Web page: https://www.decypher.bio/
Projects: Membrane interactions of cyclic lipodepsipeptides, Assessment of non-ribosomal protein synthetase accuracy of cyclic lipodepsipeptides, Synthesis of non-natural analogues of CLiPs, Project: Search when changing attribute name
Web page: Not specified
Projects: Kevin's Test project, Project Test Permissions, Test program seek-1.14, Test Project 07-11-2023, Test project seek-1.15, ENA Upload tool
Web page: Not specified
Programme: deCYPher
Public web page: Not specified
Templates to be used by wet-lab when performing an experiment for a WP or Task to describe experimental conditions in Study and Assays.
Programme: deCYPher
Public web page: Not specified
Tables as defined by the data model and the codebook
Programme: deCYPher
Public web page: Not specified
Objectives: WP 2 main’s objective is to overcome the challenge to efficiently identify, select and functionally express CYPs in microbial hosts by: (i) Better understanding of the CYP structure/product specificity relationship (SO1.2/SO3.2) (ii) Correct localisation & functional expression of CYPs in different microbial hosts (SO1.3) (iii) Resolving stress relief caused by CYP expression in microbes (SO2.1).
Programme: deCYPher
Public web page: Not specified
Programme: deCYPher
Public web page: Not specified
ROR ID: Not specified
Department: Not specified
Country: 
Sweden
City: Gothenburg
Web page: http://www.chalmers.se
ROR ID: https://ror.org/00cv9y106
Department: Not specified
Country: 
Belgium
City: Ghent
Web page: https://www.ugent.be
ROR ID: https://ror.org/03xrhmk39
Department: Not specified
Country: Belgium
City: Ghent
Web page: https://vib.be/
Submitter: Niels Geudens
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Study: 1 hidden item
Creator: Niels Geudens
Submitter: Niels Geudens
Input (Output material Name) (Registered Sample List) *, Name of a protocol with material output (String) *, Name of protocol parameter 1 (String) *, Output material Name (String) *, Output material characteristic 1 (String) *
Not specified
Input (Registered Sample List) *, Analysis overview (Text) *, Analysed datafile (String) *
Input (Registered Sample List) *, Protocol (String) *, Correlation output (String) *, Spatial and Temporal Alignment (String) *, Fiducidals used (Text) *, Transformation matrix (Text) *
Input (Registered Sample List) *, Protocol (String) *, Datafile Name (String) *, Datafile Link (URI) *, Imaging Method (Controlled Vocabulary - Biological Imaging Methods Onthology) *, Imaging Instrument (Text) *, Imaging Acquisition Parameters (Text) *
Input (Registered Sample List) *, Specimen Preparation (Text) *, Specimen Name (String) *
This study sample template for multi-omics research within the deCYPher project provides a structured format for researchers to enter sample-specific metadata in a manner that aligns with data repositories' requirements. The study sample describes how a sample was made by applying a protocol to the study source. By capturing details systematically, the template ensures metadata consistency, enhances discoverability, and facilitates data sharing in a way that supports FAIR data principles.
Input (Registered Sample List) *, Sample Collection (String) *, Sample Name (String) *, Title (String) *, Sample Description (String) *, Collection Data (ENA custom date) *, Accession (String) , Submission Date (String) , Status (Controlled Vocabulary - status)
