SEEK ID: https://datahub-test.elixir-belgium.org/people/46
ORCID:
https://orcid.org/0000-0003-0459-7142
Joined: 18th Apr 2024
Expertise: Not specified
Tools: Not specified
Roles
Admin
Project administrator
- Membrane interactions of cyclic lipodepsipeptides
- Assessment of non-ribosomal protein synthetase accuracy of cyclic lipodepsipeptides
- Synthesis of non-natural analogues of CLiPs
- WP2 - Bioprospecting and functional expression of CYPs
- deCYPher Composable Elements
- deCYPher experiments templates
- WP1 - Learning techniques fit for industrial biotechnology
- WP4 - Sustainable bio-based production of flavonoids and terpenoids
- WP3 - MCFs for flavonoids and terpenoids
- Project: Search when changing attribute name
- Leiden
- AG OMICS
Programme administrator
Their tagsRelated items
- Programmes (5)
- Projects (14)
- Institutions (3)
- Investigations (0+11)
- Studies (0+10)
- Assays (1+45)
- Data files (0+6)
- SOPs (1+14)
- Publications (0+2)
- Presentations (0+2)
- Events (0+2)
- Sample types (1+62)
- Samples (6+1120)
- Experiment Sample Templates (6+18)
Test
Projects: WP2 - Bioprospecting and functional expression of CYPs, deCYPher Composable Elements, deCYPher experiments templates, WP1 - Learning techniques fit for industrial biotechnology, WP4 - Sustainable bio-based production of flavonoids and terpenoids, WP3 - MCFs for flavonoids and terpenoids
Web page: https://www.decypher.bio/
Projects: Membrane interactions of cyclic lipodepsipeptides, Assessment of non-ribosomal protein synthetase accuracy of cyclic lipodepsipeptides, Synthesis of non-natural analogues of CLiPs, Project: Search when changing attribute name
Web page: Not specified
Projects: Kevin's Test project, Project Test Permissions, Test program seek-1.14, Test Project 07-11-2023, Test project seek-1.15, ENA Upload tool
Web page: Not specified
Programme: deCYPher
Public web page: Not specified
Organisms: Not specified
Templates to be used by wet-lab when performing an experiment for a WP or Task to describe experimental conditions in Study and Assays.
Programme: deCYPher
Public web page: Not specified
Organisms: Not specified
Tables as defined by the data model and the codebook
Programme: deCYPher
Public web page: Not specified
Organisms: Not specified
Objectives: WP 2 main’s objective is to overcome the challenge to efficiently identify, select and functionally express CYPs in microbial hosts by: (i) Better understanding of the CYP structure/product specificity relationship (SO1.2/SO3.2) (ii) Correct localisation & functional expression of CYPs in different microbial hosts (SO1.3) (iii) Resolving stress relief caused by CYP expression in microbes (SO2.1).
Programme: deCYPher
Public web page: Not specified
Organisms: Not specified
Programme: deCYPher
Public web page: Not specified
Organisms: Not specified
ROR ID: Not specified
Department: Not specified
Country:
Sweden
City: Gothenburg
Web page: http://www.chalmers.se
ROR ID: https://ror.org/00cv9y106
Department: Not specified
Country:
Belgium
City: Ghent
Web page: https://www.ugent.be
ROR ID: https://ror.org/03xrhmk39
Department: Not specified
Country:
Belgium
City: Ghent
Web page: https://vib.be/
Submitter: Niels Geudens
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Study: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Creator: Niels Geudens
Submitter: Niels Geudens
Investigations: 3 hidden items
Studies: 3 hidden items
Assays: 3 hidden items
Input (Registered Sample List) *, Protocol (String) *, Datafile Name (String) *, Datafile Link (URI) *, Imaging Method (Controlled Vocabulary - Biological Imaging Methods Onthology) *, Imaging Instrument (Text) *, Imaging Acquisition Parameters (Text) *
This study sample template for multi-omics research within the deCYPher project provides a structured format for researchers to enter sample-specific metadata in a manner that aligns with data repositories' requirements. The study sample describes how a sample was made by applying a protocol to the study source. By capturing details systematically, the template ensures metadata consistency, enhances discoverability, and facilitates data sharing in a way that supports FAIR data principles.
Input (Registered Sample List) *, Sample Collection (String) *, Sample Name (String) *, Title (String) *, Sample Description (String) *, Collection Data (ENA custom date) *, Accession (String) , Submission Date (String) , Status (Controlled Vocabulary - status)