Transcriptome sequencing
Experiment ViewTranscriptome sequencing
SEEK ID: https://datahub-test.elixir-belgium.org/assays/263
Experimental assay
Projects: HoloFood in DataHub
Investigation: Multi-omics in chickens
Study: Impact of host–microbiota on chicken production
Assay position: 1
Organisms: No organisms
Is ISA-JSON compliant: true
Assay Stream: Transcriptomics
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Creators and SubmitterViews: 84
Created: 6th May 2026 at 08:18
Last updated: 10th Jul 2026 at 17:07
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Institutions: Default Institution, Vlaams Instituut voor Biotechnologie, uppsala University, ILVO, VIB
This is an example of how multi-omics study can be organised in DataHub. The HoloFood project is used as an example here.
Projects: HoloFood in DataHub
Web page: Not specified
Example
Programme: Example with HoloFood project
Public web page: Not specified
Multi-modal investigation in chickens
Hologenomic approach to understand the impact of host–microbiota interactions on chicken production by analysing multiomic data, phenotypic characteristics, and associated metadata in response to novel feeds.
Submitter: Flora D'Anna
Investigation: Multi-omics in chickens
Assays: Chromatography, Library for host transcriptomics, Mass spectrometry, Metabolites extraction, Metabolomics, Transcriptome sequencing, Transcriptomics
'Assay - Data file' Sample Type linked to Assay 'Transcriptome sequencing'.
Input (title) (Registered Sample List) *, nucleic acid sequencing (String) *, Raw Data File (String) *, file_name (String) *, file_type (Controlled Vocabulary - file_type) *, run_accession (String) , fastq_ftp (String) , submitted_bytes (String) , submitted_ftp (String) , bam_ftp (String)
Not specified
Warning: A Protocol is missing. Associate a Protocol before exporting ISA.
