Library for host transcriptomics
Experiment ViewLibrary for host transcriptomics
SEEK ID: https://datahub-test.elixir-belgium.org/assays/262
Experimental assay
Projects: HoloFood in DataHub
Investigation: Multi-omics in chickens
Study: Impact of host–microbiota on chicken production
Assay position: 0
Organisms: No organisms
Is ISA-JSON compliant: true
Assay Stream: Transcriptomics
Export PNG
Download
Creators and SubmitterViews: 154
Created: 6th May 2026 at 08:14
Last updated: 16th Jul 2026 at 14:49
TagsThis item has not yet been tagged.
Related items
Projects: ISA ENA export, testing template created by user in SP, Second project, Genetic properties of the MAGIC maize population, CODEX on TMA from metastatic uveal melanoma biopsies, Test project seek-1.15, WP2 - Bioprospecting and functional expression of CYPs, WP1 - Learning techniques fit for industrial biotechnology, deCYPher Composable Elements, deCYPher experiments templates, Templates - EGA Data Access Committee @ VIB, Croockshanks' PhD, EGA submissions - H. Granger Lab, EGA submissions - H. Potter Lab, HoloFood in DataHub, COMPASS
Institutions: Default Institution, Vlaams Instituut voor Biotechnologie, uppsala University, ILVO, VIB
This is an example of how multi-omics study can be organised in DataHub. The HoloFood project is used as an example here.
Projects: HoloFood in DataHub
Web page: Not specified
Example
Programme: Example with HoloFood project
Public web page: Not specified
Multi-modal investigation in chickens
Hologenomic approach to understand the impact of host–microbiota interactions on chicken production by analysing multiomic data, phenotypic characteristics, and associated metadata in response to novel feeds.
Submitter: Flora D'Anna
Investigation: Multi-omics in chickens
Assays: Chromatography, Library for host transcriptomics, Mass spectrometry, Metabolites extraction, Metabolomics, Transcriptome sequencing, Transcriptomics
Library construction for HoloFood shotgun chicken transcriptomics
Creator: Flora D'Anna
Submitter: Flora D'Anna
'Assay - Material' Sample Type linked to Assay 'Library for host transcriptomics'.
Input (Sample Name) (Registered Sample List) *, protocol (Registered SOP) *, title (String) *, library_output_name (String) *, library_name (String) *, design_description (String) *, library_source (Controlled Vocabulary - library_source) *, library_strategy (Controlled Vocabulary - library_strategy) *, library_selection (Controlled Vocabulary - library_selection) *, library_layout (Controlled Vocabulary - library_layout) *, platform (Controlled Vocabulary - platform) *, instrument_model (Controlled Vocabulary - instrument_model) *, experiment accession (String)
Not specified
Library construction protocol Version 1
Library construction for HoloFood shotgun chicken transcriptomics
SEEK ID: https://datahub-test.elixir-belgium.org/sops/86
Link: /assays/262
Filename: Library construction - HoloFood shotgun chicken transcriptomics.docx
Format: Word document
Size: 13 KB
